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Re: Si-PIN with a view


 

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Charles,

I for the life of me can¡¯t understand your thinking. You have a $7,000 professional Si-Pin spectrometer system and software that is designed specifically to determine elemental unknown¡¯s and you ignore every aspect of what it¡¯s set up to do and move an un-calibrated data set to a free kid¡¯s NaI soundcard program to cal and interpret. The use of ¡°Sliders¡± to fudge a secondary energy cal based on what you and Theremino think should be a proper fit doesn¡¯t pass anyone¡¯s giggle test. The DppMCA software had all of that done for you already and correctly. Worse yet you use that estimation to interpret the data. ?That absolutely boggles my mind.? YOU don¡¯t tell the data what-it-is, ?IT tells you what-it-is. ?You have all of this backwards.

If, as you say, you have the source code and complete control over the Theremino software, and have extensively customized and programmed it, then program in a cal routine to use the quadratic equation and coefficients that the DppMCA has already provided you. You can do that either externally to import or put it inside Theremino itself. ??Secondary Cals should ?be avoided like the plague and having to do fudging fits found in Theremino instead of an industry standard calibration routine shouts loudly how inadequate that program is for what you¡¯re trying to use it for.

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When you said:

?¡°As I have tried to explain, the E cal in DppMCA is irrelevant for my work.? My version of Theremino imports the bin data from the .mca files and ignores the E cal embedded in the files.¡±

How is a proper calibrate irrelevant? It¡¯s absolutely essential and fundamental to what is being done, not some guess work down the line. ?You¡¯re not even validating that everything is working correctly by using a cal check to verify the system before taking data. Why are you so fixated on Theremino? It s a nice end product for a pretty picture but it¡¯s not a data reduction program. You¡¯re using your element labels as a crutch for interpretation which has already, and will, get you in trouble. It¡¯s not done that way, you manually check peaks and energies against interferences to validate the data. There are a lot of very close interferences that will guarantee that your approach will fail. Use DppMCA, your eyeballs, brain and an energy table to do picks and eliminate interferences. Then move it over to Theremino for a presentation but with the proper calibrate.

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You say:

¡°The crucial factor for me is that I have complete control over the Theremino software and have customized it extensively to support my hobby.? I find this to be fun and satisfying and a good way to share information with my friends.¡±

If you have control over the software, then program in the DppMCA equations or coefficients - that should be fun to do for a hobby and will be useful code for others to use as well.

But right now you¡®re not sharing useful QC¡¯d information with friends, you¡¯re ignoring fundamental principles of good common sense, clear thinking, and scientific methodology with the procedures that you¡¯re currently using.?

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Dud

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From: [email protected] [mailto:[email protected]] On Behalf Of Charles David Young
Sent: Saturday, March 7, 2020 5:05 AM
To: [email protected]
Subject: Re: [XRF] Si-PIN with a view

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" These spectra are wrong as well. It appears you have a bad energy cal that you were using."

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Sorry, but my Theremino image of these spectra speaks for itself.? The energy cal over the entire range from AgLa at 2.98 up to CeKb2 at 40.23 is very precise.

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As I have tried to explain, the E cal in DppMCA is irrelevant for my work.? My version of Theremino imports the bin data from the .mca files and ignores the E cal embedded in the files.

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Dud, I appreciate your valiant efforts to explain your professional process to an amateur rock hound like myself.? For my purposes though I like DppMCA for collecting data (really no choice with this Amptek device) and Theremino for analyzing and presenting the results.? The crucial factor for me is that I have complete control over the Theremino software and have customized it extensively to support my hobby.? I find this to be fun and satisfying and a good way to share information with my friends.

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Charles

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On Fri, Mar 6, 2020 at 9:52 PM Dude <dfemer@...> wrote:

Charles,

These spectra are wrong as well. It appears you have a bad energy cal that you were using.

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This is the Ag cal on 2/24/202

START_TIME - 02/24/2020 04:58:50

SERIAL_NUMBER - 0

<<CALIBRATION>>

LABEL - Channel

312 3.605

1275 14.96

I¡¯d surely like to know how you got that cal Sb and Y?

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Here¡¯s the Ce cal Its using Ag from 3/2/2020

<<CALIBRATION>>

LABEL - Channel

293 3.151

2031 22.163

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Here¡¯s the Nb cal its using Ag as well

<<CALIBRATION>>

LABEL - Channel

293 3.151

2031 22.163

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Using the Ag cal, Ka is at ch 1881 with a 22.1 keV which is correct. Then looking at ?channel 2953 (the Ce peak) it shows 34.75 keV which is also correct

However using the Nb file the Ka peak at channel 2953 is 32.25? keV

The Ce file Ka at channel 2953 also shows ?a 32.5 keV which is the Ka of Ba . Ce should be at 34.7 keV ?

So while the Ag cal file is correct the Ce and Nb files are energy shifted implying a gain change or a different cal file was used. Looking at the 2 point data that¡¯s pretty clear.

Looking at the Ag file at channel 2953 gives 34.75 keV

Ch 2953 for the Nb file is? 32.25 - Nb and Ce use the same cal. The Ag file is different

Ch 2953 for Ce is 32.25? - Nb and Ce use the same cal. The Ag file is different

The energy offset is 32.25? ¨C 34.75 = -2.5 keV error

Your Ce should have come in at 34.77 keV but the cal is -2.5 keV to low due to using an old Ag erroneous cal which ID¡¯s it as Ba at 32.25 keV.? The same effect occurs with the Ce and Nb La¡¯s producing an offset making Ce look and ID like Ba.

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This is a classic example of what you are doing with Theremino is wrong. Look at the attached Ag Cu Ce ?.png file. Ag and Ce are lined up correctly but nothing could be further from the truth.? Look at the raw .mca ¨C files nothing lines up correctly. The problem is you have taken ?erroneous data without even examining it, quickly moved it over to theremino and manually fudged it with ¡°sliders¡± to fit a preconceived notion making it look ¡°pretty¡±. ?

The fault here ?lies in your comment - ¡°These were scanned on different days.? It takes hours to create each scan so there is no point in trying to recalibrate each day.? If this Si-PIN has any drift I have not been able to detect it¡±.

I understand the issue of a really weak source and the time it takes, but skipping absolutely essential steps in spectroscopy is just not done and this is a perfect example of why.? If you had looked at and interpreted the raw data spectra in DppMCA it might have been apparent ( it wasn¡¯t for me I thought it was Ba and it fit Ba , even DppMCA thought it was Ba.) but looking at the known Np peaks should have said something was wrong as they were shifted too. Yeah, I didn¡¯t do that either.

The essential steps in spectroscopy that always need to be done are pretty straight forward.

1.????? Determine what energy range you want to look at and set up the gain to do that. In your case your source is Am, so a good energy range would include 59.5 keV. For the low end you can get an source that covers the low end like Fe55 and use the Am Np peaks. Use a 3pt or better cal as anything fits 2 pts and if one is off you¡¯ll never know it.

2.????? For THAT energy range and Gain run a hot source calibrate. Check other peaks that you didn¡¯t use to make sure it¡¯s a good cal fit. Save that cal and use it for that energy/gain range the next time. But ¨C see #3

3.????? At the beginning of the day or before the first spectra, do a Cal Check. Use the hot cal source and verify that all channels and their energy line up and are correct. This doesn¡¯t take any time as it¡¯s a hot cal source you are using. At the end of the days run do another Cal Check ¨C QA/QC you know. If it doesn¡¯t match throw out the data and start over. That¡¯s pretty rare though as these things shouldn¡¯t drift.

4.????? Using DppMCA start ID¡¯ing the big peaks working down using your eyeballs and an energy table looking for close interferences. Put a manual ROI on it and verify Ka,b- La,b and when you have a positive ID leave the ROI on it. A positive ID needs both a and b lines. A not determined has only one line so don¡¯t bet on that horse. Do not use computer picks as that is only there to mislead and embarrass you.

?If you must use the Theremino pretty picture thing then Cal it correctly. The very fact that it doesn¡¯t have a linear or quadratic regression in it is a real clue it¡¯s not ready for prime time.? Being that you¡¯re an accomplished software geek with this program use the linear or quadratic equation from DppMCA under the Calibrate tab ?(Energy =A+Bx ?or for a quadratic E= A+B*x + C*x^2 where x is channel number) to calculate the channel vs energy table then import that directly into the Thermino and avoid the problematic slider thing.? Or ?program it in to Theremino and have it calc it.

The slider thing is probably needed for the sound cards non linear response or missing codes. It¡¯s, at best, an approximation that works for NaI but shouldn¡¯t be used ?for high res detectors.

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Dud

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From: [email protected] [mailto:[email protected]] On Behalf Of Charles David Young
Sent: Thursday, March 5, 2020 10:28 AM
To: [email protected]
Subject: Re: [XRF] Si-PIN with a view

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Dud, here are the .mca files along with another one that I did of Nb last night.? I would be interested in seeing what calibration points you can come up with.? These were scanned on different days.? It takes hours to create each scan so there is no point in trying to recalibrate each day.? If this Si-PIN has any drift I have not been able to detect it.

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Charles

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On Thu, Mar 5, 2020 at 6:56 AM <GEOelectronics@...> wrote:

"Dud, I made a special decluttered plot just for you.? And in the process I discovered that the SmKa1 peak that I had previously identified is actually CeKb2 so this Ce metal is actually a little purer than I thought!

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Charles"

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Be sure to pay attention to L-gamma and M- shell lines too.?

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Geo

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----- Original Message -----
From: Charles David Young <charlesdavidyoung@...>
To: [email protected]
Sent: Wed, 04 Mar 2020 23:07:58 -0500 (EST)
Subject: Re: [XRF] Si-PIN with a view

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Ok, so the deal is that using AgKa1 as one of the points on the E cal line is not very accurate by the time it gets up to CeKa1 so the peak finder in DppMCA

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assumed that peak was BaKa1.? Use these cal points instead in DppMCA:

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2955 34.72

270 2.98

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You may ask why I never noticed this discrepancy?? The reason is that I use DppMCA strictly for collecting data.? The E cal in DppMCA is not critical.? All analysis is done in my highly customized Theremino where I can label things nicely.? The table format of
DppMCA just doesn't cut it for me.

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Dud, I made a special decluttered plot just for you.? And in the process I discovered that the SmKa1 peak that I had previously identified is actually CeKb2 so this Ce metal is actually a little purer than I thought!

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Charles

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On Wed, Mar 4, 2020 at 2:44 PM Dude <dfemer@...> wrote:

Charles,

Check your ¡°slider¡± calibration. This is Ba not Ce. Go back to the
.mca file and look at it with the original cal using the DppMCA program. It
looks like you used Ag for a cal but when was that cal done? Before you ran the
¡°Ce¡± or was it an old one?

Please clean up the theremino plot, you have so many lines and
labels on their it¡¯s hard to tell what is what. Get rid of anything that¡¯s not
ID¡¯d or an interference anything else is clutter.? One shouldn¡¯t ?do an interp
based on pre-established labels. Treat each peak separately starting at the low
energy and work your way up ruling out close interferences. Then put an ROI and
?ID label on it and use a real MCA program.? Thermino is great for NaI but it¡¯ll
get you in trouble with these high res detectors.

There is no Sm , La or Ce in here and it looks like you were at
83% dead time which is too high which can shift energy and FWHM.

Think scientifically. The hypothesis was its Ce. You need to prove
that.? I¡¯ll guess you used your pre-established Ce labels and did the ¡°slider¡±
thing to line it all up to a preconceived notion. ??Wrong approach and guaranteed
to get you in trouble- Don¡¯t use a secondary Cal - use the data acquisition
program to ID peaks.? Look at the periodic table ¨C Ba, La, and Ce line up so
they are going to have the same spectral structure close energies and look
alike if the cal isn¡¯t right.? An interp starts by looking at each individual peak
energy and any surrounding interferences with no pre-conceived notions, then decide
based on Ka,b and La,b and move on to the next. If it doesn¡¯t take you an hour
or more you¡¯re not doing it right. Computer picks suck, stay a long way away ¨C
use your eyes, brains and an energy table.

Dud

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From:[email protected]
[mailto:[email protected]] On Behalf Of Charles David Young
Sent: Wednesday, March 4, 2020 4:25 AM
To:[email protected]
Subject: Re: [XRF] Si-PIN with a view

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Steve,

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This is from Gunnar Faerber who did his own analysis.?
He is also the one that identified the Betafo speciman as brannerite.

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Meanwhile, this is an interesting scan of Ce metal.? It
is evidently hard to purify it of the other lanthanides because it shows plenty
of Sm and even detectable La.? The La1 and Lb1 peaks echo the Ka1 and Kb1
peaks nicely.? Taken together this set of peaks is quite useful for
calibration from low to high.

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Charles

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On Tue, Mar 3, 2020 at 9:03 PM WILLIAM S Dubyk <sdubyk@...> wrote:

Charles, who did you get your specimen of ishikawaite from,
and do you have a microprobe analysis for it? The reason I ask is that out of
curiosity I looked at some of the samarskite analyses from the Petaca district,
and several of the Queen mine specimens may be that mineral. I will ask Al
Falster, who is somewhat of an expert on the samarskite minerals, about what
analyses to use to determine this - oxides versus cation ratios. From my
understanding, this mineral has U+Th greater than Y+REE, and that is what I see
in the Queen mine specimens.


Steve

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