Mat (and all),
I currently own four of the rigs. One is completely accessorized, including the Gen TX board and the keyer module. The others are in various stages of accessorization, down to my bench "mule" which is barebones and is used to develop mods for the others. I'm currently using it to model a frame for a power supply fan assembly which can be fitted to the existing heat sink and will be "always on". My implementation of IF Out will be similar to what Yaesu did with the FT-90x series - and in fact, a YO-901 will play nicely with the FT-980 when cabled properly. Very similar 1st IF DNA, so to speak.
There's a Yaesu-modified FTV-901R w/ cable kicking around the collection, an FC-757AT and two FL-7000 amplifiers - so the peripheral complement is well represented. Amongst rigs of the period, it's my favorite. There are two inline here at the moment.
Your TCXO mod sounds interesting. I've had to replace the 30.0000MHz reference oscillator crystal in two of the radios (Yaesu sold me a handful of spares - thanks Jose!) but a rework of that area may preclude the parts aging out of spec - as they often do. Another thing I'm working on is a bit of reverse-engineering of the accessory band PROM so the rig can be properly fitted with things like 60M and maintain optimum spectral purity. I bought a bunch of red and green 1x5mm LEDs and am going to change some of the yellow indicators out whenever I have the front panels off the rigs.
Lastly, computer control. I'll be happy to assist the group with Hamlib-related efforts. For a bit of retro-computing fun I'm thinking about writing a CAT program for the Tandy Model 100/102 (I have two of the latter). They're neat little computers and would excel in a dedicated role like this. A Model 10x is also small enough that it won't hog your operating desk space.
73 - and Happy 2021 all.
Fred, N8YX