Many of the apps you are using require Hamlib (WSJT-X, JS8Call, etc.) For those,?if you want to use FLrig, you select Hamlib Rig ID #4 (which makes Hamlib? it use FLRig instead).
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Slightly related question:? Is HamLib required to run FLDIGI (specifically FLRIG for WSJTX and JS8CALL)?
The Hamlib application seems to have a number of bugs and I'd like to just get rid of it. I actually did remove the Hamlib directory from /home/pi, and was expecting to see a note in BAP that it wasn't installed, but BAP reports it still is installed so maybe I missed some parts of it.?