Hi Bill,
In the past I've seen just restoring the factory jumpers on the main board for the country of use (eg. US, EU, DE, JA, etc) to remove the MARS Mod, and a reset put them back to new, out of box condition. The usual reason for needing to program anything is when the MARS mod is in and they want the channelized 5MHz frequencies. The MARS mod clears these presets. Some radio's will have 2-3 jumpers that would need to be put back depending on the LOT Number of the radio and the mod that was done. I'm on my 4th one personally and the first 2 were the same, the third and forth ones are each different than the first 2, revision changes I suppose.
I haven't seen a list for what you are wanting, only the 5MHz stuff. I do know Yaesu has on occasion replaced the serial eeprom when sent in for repairs.
Mitch
N4MF